Created by
Share your knowledge / experiences
About Startbioinfo  |
Other web-portals |
BdataA  |
Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Long non-coding RNA
piRNA
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and toxicology
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Toxicology
Transcription factors and binding sites
Suggested Readings
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Intuitive browsing
Multi-level categories
Alphabetical list
Promoter prediction
Broad reviews
An introduction to promoters, their types and activities in detail
The transcriptional initiation process: review
PAID
A description on RNA polymerase II core promoter elements
Functional characterization of core promoter elements
Compilation and analysis of E.coli promoter DNA sequences
PAID
Effects of a polymorphism in the human tumor necrosis factor alpha promoter on transcriptional activation
The organization, promoter analysis and expression of the human PPARG gene
Origin and evolution of CpG islands: a review
A novel method for prokaryotic promoter prediction based on DNA stability
Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters
Promoter2.0: for the recognition of pol II promoter sequences
Interpolated markov chains for eukaryotic promoter recognition
Large scale human promoter mapping using CpG islands
Identification and analysis of eukaryotic promoters: recent computational approaches
PAID
Predicting Pol II promoter sequences using transcription factor binding sites
PAID
TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies
The Eukaryotic Promoter Database EPD
SCPD: a promoter database of the yeast Saccharomyces cerevisiae
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and CHIP-chip experimental data
PlantProm: a database of plant promoter sequences
Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes
Osteo-Promoter Database (OPD) - promoter analysis in skeletal cells
Disclaimer
copyright © Dr. Kshitish Acharya K; all rights reserved